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Page Index
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This tutorial shows how to use the UCSC genome browser to find a list of genes in a given genomic region. |
0:54
- Set up the Genome Browser display to see the genes in your region. 1:31 - Zoom to a cytoband. 1:54 - Display only one isoform per gene. 2:20 - Use the table Browser to get the list of genes in your region. 3:40 - Use knownCanonical table in the table Browser to list only one isoform per gene. run time: 4:33 |
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This tutorial shows how to navigate between exons of a gene using the UCSC Genome Browser. |
1:11
- Zoom to a single exon. 1:55 - Adjust width of graphic display. 2:20 - Highlight a region. 2:39 - Jump to the next exon. run time: 4:25 |
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This tutorial demonstrates how to find all the single nucleotide polymorphisms in a gene using the UCSC Genome Browser. |
0:43
- Set up Genome Browser display to see your gene. 1:35 - Turn on the SNPs track to see SNPs in your gene. 3:27 - Get SNPs from the Table Browser. 4:36 - Load Table Browser results as a Custom Track. run time: 6:13 |
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This tutorial shows how to find all the single nucleotide polymorphisms upstream from genes using the UCSC Genome Browser. |
0:43
- Set up the Genome Browser display to see your gene. 2:00 - Use the Table Browser to get upstream regions. 3:38 - Paste and view your upstream regions as a Custom Track. 5:23 - Intersect upstream regions with the SNP track. 6:43 - Load upstream SNPs as a new Custom Track. run time: 8:14 |
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This tutorial will demonstrate how to find the tables in the UCSC database that are associated with the data tracks in the Genome Browser graphical viewer. |
0:42
- Set up the Genome Browser display. 1:18 - Turn on data tracks. 2:03 - Find a gene. 2:45 - Find tablename by mouseover. 3:38 - Find tablename by table schema: Use minibutton to access configuration page. 4:33 - Find tablename by table schema: Use track-control link to access configuration page. 4:47 - Find tablename by table schema: Click an individual item. 5:25 - Check contents with Table Browser: All fields. 6:53 - Check contents with Table Browser: Extract selected data fields. 7:25 - Download entire table. run time: 8:39 |
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This tutorial will demonstrate how to locate amino acid numbers for coding genes using the UCSC Genome Browser. |
0:36
- Set up the Genome Browser display. 1:35 - Open genes tracks: UCSC Genes, RefSeq, GENCODE. 2:17 - Locate your gene and zoom to an exon. 3:26 - Turn on RefSeq track coloring-by-codons. 3:51 - Zoom to codon level. 4:23 - Use minibutton for track configuration: Show codon numbering. 5:16 - Configure composite track. 5:44 - Confirm codon numbers with OMIM AV SNPs and UniProt Variants. 7:14 - View UniProt Variants details page. run time: 8:02 |